TPS

o+Transition Path Sampling (TPS) library Documentation

o*Compiling/Linking/Running

o+Demos and Walkthroughs

o*Bug List

o+Modules

o+Class List

o+Class Hierarchy

o*Class Members

o+File List

|o*/Users/askeys/Codes/tps/CXX/config.h

|o*/Users/askeys/Codes/tps/CXX/tps.h

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithm.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithm.h

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmAimlessShooting.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmAimlessShooting.h

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmBruteForce.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmBruteForce.h

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmFFS.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmFFS.h

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmSEnsemble.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmSEnsemble.h

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmTIS.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmTIS.h

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmTPS.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAlgorithmTPS.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysis.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysis.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisCommitter.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisCommitter.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisDistinguishingReactionCoordinate.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisDistinguishingReactionCoordinate.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisTimeCorrelationFunctionC.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisTimeCorrelationFunctionC.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisTimeCorrelationFunctionCAB.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisTimeCorrelationFunctionCAB.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisTransitionStates.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisTransitionStates.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisTransitionTimes.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisTransitionTimes.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisWriteCoordsAtomic.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisWriteCoordsAtomic.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisWriteOrderParameter.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisWriteOrderParameter.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisWriteTrajectory.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisWriteTrajectory.h

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisWriteXYZAtomic.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsAnalysisWriteXYZAtomic.h

|o*/Users/askeys/Codes/tps/CXX/TpsInitializer.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsInitializer.h

|o*/Users/askeys/Codes/tps/CXX/TpsInitializerBruteForce.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsInitializerBruteForce.h

|o*/Users/askeys/Codes/tps/CXX/TpsInitializerExplicitTrajectory.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsInitializerExplicitTrajectory.h

|o*/Users/askeys/Codes/tps/CXX/TpsInitializerMidpointTS.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsInitializerMidpointTS.h

|o*/Users/askeys/Codes/tps/CXX/TpsInitializerTransitionState.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsInitializerTransitionState.h

|o*/Users/askeys/Codes/tps/CXX/TpsOrderParameter.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsOrderParameter.h

|o*/Users/askeys/Codes/tps/CXX/TpsOrderParameterAggregate.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsOrderParameterAggregate.h

|o*/Users/askeys/Codes/tps/CXX/TpsRNG.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsRNG.h

|o*/Users/askeys/Codes/tps/CXX/TpsRNG48.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsRNG48.h

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPlugin.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPlugin.h

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginAtomic.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginAtomic.h

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginAtomicMolSimAPI.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginAtomicMolSimAPI.h

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginGlotzilla.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginGlotzilla.h

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginLAMMPS.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginLAMMPS.h

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginLattice.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsSimulationPluginLattice.h

|o*/Users/askeys/Codes/tps/CXX/TpsTestDiatomicLAMMPS.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTestDiatomicLAMMPS.h

|o*/Users/askeys/Codes/tps/CXX/TpsTestDiatomicOrderParam.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTestDiatomicOrderParam.h

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2d.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2d.h

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2dBD.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2dBD.h

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2dMC.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2dMC.h

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2dMD.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2dMD.h

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2dOrderParam.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTestPeSurf2dOrderParam.h

|o*/Users/askeys/Codes/tps/CXX/TpsTestRandomWalk.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTestRandomWalk.h

|o*/Users/askeys/Codes/tps/CXX/TpsTestRandomWalkOrderParam.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTestRandomWalkOrderParam.h

|o*/Users/askeys/Codes/tps/CXX/TpsTimeslice.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTimeslice.h

|o*/Users/askeys/Codes/tps/CXX/TpsTimesliceModifier.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTimesliceModifier.h

|o*/Users/askeys/Codes/tps/CXX/TpsTimesliceModifierBoltzmannVdist.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTimesliceModifierBoltzmannVdist.h

|o*/Users/askeys/Codes/tps/CXX/TpsTimesliceModifierPerturbVelocities.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTimesliceModifierPerturbVelocities.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectory.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectory.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryContinuous.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryContinuous.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryEnsemble.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryEnsemble.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryIterator.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryIterator.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryRandomStep.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryRandomStep.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryUniformStep.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryUniformStep.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryUserDefined.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrajectoryUserDefined.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMove.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMove.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMovePathReversal.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMovePathReversal.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShift.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShift.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShiftBackward.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShiftBackward.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShiftForward.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShiftForward.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShot.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShot.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotAimless.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotAimless.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotBackward.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotBackward.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotFlexible.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotFlexible.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotFlexibleV2.cpp

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotFlexibleV2.h

|o*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotForward.cpp

|\*/Users/askeys/Codes/tps/CXX/TpsTrialMoveShotForward.h

o+Examples

\*File Members